課程名稱 |
植物基因體學 Plant Genomics |
開課學期 |
105-1 |
授課對象 |
學程 生物產業自動化學程 |
授課教師 |
林彥蓉 |
課號 |
Agron5056 |
課程識別碼 |
621 U6450 |
班次 |
|
學分 |
3 |
全/半年 |
半年 |
必/選修 |
選修 |
上課時間 |
星期五6,7,8(13:20~16:20) |
上課地點 |
|
備註 |
農藝館316與劉力瑜、董致韡、黃永芬合開 總人數上限:16人 |
Ceiba 課程網頁 |
http://ceiba.ntu.edu.tw/1051Agron5056_ |
課程簡介影片 |
|
核心能力關聯 |
核心能力與課程規劃關聯圖 |
課程大綱
|
為確保您我的權利,請尊重智慧財產權及不得非法影印
|
課程概述 |
Genome science has been one of the most blooming sciences in the past decade. The complete genome sequences of the dicot model plant, Arabidopsis, and of the monocot crops such as rice, sorghum and maize are released. In addition, many crops and plants are undergone sequencing. The genomic information provides various research methodologies and speeds up traditional researches. This course will emphasize on genetic mapping, physical mapping, and genome sequencing and annotating to dissect plant genomes. Consequently, this course will introduce the applications of genomics in positional cloning, gene expression, comparative mapping, genetic variation and so on. |
課程目標 |
Organization and Structure of Genomes
Assemblies of Genetic and Physical Maps
Genome Sequencing Projects
Plant Functional Genomics
Bioinformatics-Sequence alignment, comparative genomics
SNPs and Variation
|
課程要求 |
待補 |
預期每週課後學習時數 |
|
Office Hours |
|
指定閱讀 |
待補 |
參考書目 |
Benfey P.N., and Protopapas A.D., “Genomics” Pearson Education, USA, 2005
Cullis C.A. “Plant Genomics and Proteomics”, John Wiley & Son (Asia), USA, 2004
|
評量方式 (僅供參考) |
|
週次 |
日期 |
單元主題 |
第1週 |
09/16 |
Holliday中秋節彈性放假 |
第2週 |
09/23 |
Introduction of Plant Genomics(Lin) |
第3週 |
09/30 |
Global Gene Expression (Liu) |
第4週 |
10/07 |
Bioinformatics: Lab of Global Gene Expression (Liu) |
第5週 |
10/14 |
Organization and Structure of Genomes (Lin) |
第6週 |
10/21 |
Establishing a Linkage Map and Physical Map of Genome (Lin)
|
第7週 |
10/28 |
Genome Sequencing Methods and Strategies (Tung) |
第8週 |
11/04 |
Genome variations (Tung) |
第9週 |
11/11 |
Application of NGS (Tung) |
第10週 |
11/18 |
Sequence Alignment (Liu) |
第11週 |
11/25 |
Bioinformatics: Lab of Sequence Alignment |
第12週 |
12/02 |
Midterm (Lin & Tung) |
第13週 |
12/09 |
Transposable Elements (Huang) |
第14週 |
12/16 |
Genesis of New Genes (Huang) |
第15週 |
12/23 |
Comparative Genomics (Huang) |
第16週 |
12/30 |
Plant Genomics (Huang) |
第17週 |
01/06 |
Final (Literature Review and Presentation) |
第18週 |
01/13 |
Resource of Plant Genome Projects (Huang) |
|